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Recent Publications

Majumder S., Coull B. A., Welch J. L. M., La Riviere P. J., Dewhirst F. E., Starr J. R., Lee K. H. (2024). Multivariate Cluster Point Process to Quantify and Explore Multi‐Entity Configurations: Application to Biofilm Image Data. Statistics In Medicine. 43:5446-5460. doi:

Kim J., Buffenstein R., Bronikowski A. M., Vanegas N.-D.P., Rosas L., Agudelo-Garcia P., Mora A. L., Rojas M., Englund D. A., LeBrasseur N. K., Nunes A., Robbins P. D., Kohut M. L., Kothadiya S., Bardhan R., Camell C. D., Sturmlechner I., Goronzy J. J., Yeh C.-Y., Lamming D. W., Huang S., Leiser S. F., Escorcia W., Gill M. S., Taylor J. R., Helfand S. L., Korm S., Gribble K. E., Pehar M., Blaszkiewicz M., Townsend K. L., McGregor E. R., Anderson R. M., Stilgenbauer L., Sadagurski M., Taylor A., McNeill E., Stoeger T., Bai H. (2024). The Fourth Annual Symposium of the Midwest Aging Consortium. The Journals Of Gerontology Series A. 79:glae236. doi:

Eren A. M., Delmont T. O. (2024). Bioprospecting marine microbial genomes to improve biotechnology. Nature. 633:287-288. doi:

Chimileski S., Borisy G. G., Dewhirst F. E., Welch J. L. M. (2024). Tip extension and simultaneous multiple fission in a filamentous bacterium. Proceedings Of The National Academy Of Sciences Of The United States Of America. 121:e2408654121. doi:

Matrishin C. B., Haase E. M., Dewhirst F. E., Welch J. L. M., Miranda‑Sanchez F., Chen T., MacFarland D. C., Kauffman K. M. (2024). Correction: Phages are unrecognized players in the ecology of the oral pathogen Porphyromonas gingivalis. Microbiome. 12:144. doi:

Attenborough T., Rawlinson K. A., Diaz Soria C. L., Ambridge K., Sankaranarayanan G., Graham J., Cotton J. A., Doyle S. R., Rinaldi G., Berriman M. (2024). A single-cell atlas of the miracidium larva of Schistosoma mansoni reveals cell types, developmental pathways, and tissue architecture. Elife. 13. doi:

Martin C., Richter N., Lloren R., Amaral-Zettler L., Dubois N. (2024). Machine learning reveals that sodium concentration and temperature influence alkenone occurrence in Swiss and worldwide freshwater lakes. Frontiers In Earth Science. 12:1409389. doi:

Schaible G. A., Jay Z. J., Cliff J., Schulz F., Gauvin C., Goudeau D., Malmstrom R. R., Ruff S. E., Edgcomb V., Hatzenpichler R. (2024). Multicellular magnetotactic bacteria are genetically heterogeneous consortia with metabolically differentiated cells. Plos Biology. 22:e3002638. doi:

Welch D. B. M., Olins A. L., Olins D. E. The Effects of Lamin B Receptor knockdown on a Myeloid Leukemia Cell. doi:

Kennedy S. J., Risser D. D., Paul B. G. Diel expression dynamics in filamentous cyanobacteria. doi:

Olins A. L., Welch D. M., Saul D., Prudovsky I., Olins D. E. The Multifaceted Phenotype of Senescent HL-60/S4 Macrophages. doi:

Kananen K., Veseli I., Quiles Pérez C. J., Miller S., Eren A. M., Bradley P. H. Adaptive adjustment of significance thresholds produces large gains in microbial gene annotations and metabolic insights. doi:

Arrington E. C., Tarn J., Kivenson V., Nunn B. L., Liu R. M., Paul B. G., Valentine D. L. Hydrocarbon Metabolism and Petroleum Seepage as Ecological and Evolutionary Drivers for Cycloclasticus. doi:

Simon S. A., Soares A. R., Bornemann T. L. V., Lange A., Griesdorn L., Fuentes A., Dieckmann M., Krok B. A., Ruff S. E., Hügler M., Moraru C., Probst A. J. Inferring replication states of bacteria and viruses in enrichment cultures via long-read sequencing. doi:

Jiang Q., Cao L., Han Y., Li S., Zhao R., Zhang X., Ruff S. E., Zhao Z., Peng J., Liao J., Zhu B., Wang M., Lin X., Dong X. Cold seeps are hotspots of deep-sea nitrogen-loss driven by microorganisms across 21 phyla. doi: