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Peer-Reviewed Journal Articles

Bennice, C.O., Rayburn, A.P., Brooks, W.R., and Hanlon, R.T. (2019) Fine-scale habitat partitioning facilitates sympatry between two octopus species in a shallow Florida lagoon. Marine Ecology Progress Series 609:151-161. 

Chanaday, N., Cousin, M., Milosevic, I., Watanabe, S., and Morgan, J.R. (2019) The synaptic vesicle cycle revisited: new insights into the modes and mechanisms. Journal of Neuroscience 39:8209-8216. .

Chandler, T., Shroff, H., Oldenbourg, R., and La Riviere, P. (2019) Spatio-angular fluorescence microscopy I. Basic Theory. Journal of the Optical Society of America A 36(8):1334-1345. 

Chandler, T., Shroff, H., Oldenbourg, R., and La Riviere, P. (2019) Spatio-angular fluorescence microscopy II. Paraxial 4f imaging. Journal of the Optical Society of America A 36(8):1346-1360. 

Colón-Ramos, D.A., La Riviere, P., Shroff, H., and Oldenbourg, R. (2019) Transforming the development and dissemination of cutting-edge microscopy and computation. Nature Methods 16(8):667-669. 

Dion, M.F., Kapoor, M., Sun, Y., Wilson, S., Ryan, J., Vigouroux, A., van Teeffelen, S., Oldenbourg, R., and Garner, E.C. (2019) Bacillus subtilis cell diameter is determined by the opposing actions of two distinct cell wall synthetic systems. Nature Microbiology 4(8):1294-1305. 

DuClos, K.T., Dabiri, J.O., Costello, J.H., Colin, S.P., Morgan, J.R., Fogerson, S.M., and Gemmell, B.J. (2019) Thrust generation during steady swimming and acceleration from rest.  Journal of Experimental Biology 222(Pt 22). pii: jeb212464. .

Geffeney, S.L., Williams, B.L., Rosenthal, J.J.C., Birk, M.A., Felkins, J., Wisell, C.M., Curry, E.R., and Hanifin, C.T. (2019) Convergent and parallel evolution in a voltage-gated sodium channel underlies TTX-resistance in the Greater Blue-ringed Octopus: Hapalochlaena lunulata. Toxicon 170:77-84. 

Gibson, A., Laubichler, M.D., and Maienschein, J. (2019) Computational history and philosophy of science. Isis 110:497-501. 

Hanslik, K.L., Allen, S.R., Harkenrider, T.L., Fogerson, S.M., Guadarrama, E., and Morgan, J.R. (2019) Regenerative capacity in the lamprey spinal cord is not altered after a repeated transection. PLoS One 14(1): e0204193. 

Horb, M., Wlizla, M., Abu-Daya, A., McNamara, S., Gajdasik, D., Noble, A., Team NBRP, Team CRBX, Robert, J., James-Zorn, C., and Guille, M.J. (2019) Xenopus resources: transgenic, inbred and mutant animals, training opportunities, and web-based support. Frontiers in Physiology, 

Iglesias, T.L., Boal, J.G., Frank, M.G., Zeil, J., and Hanlon, R.T. (2019) Cyclic nature of the REM-like state in the cuttlefish Sepia officinalis. Journal of Experimental Biology 222. 

Koganti, L., Liu, J., DeMajewski, A., Agostini, M.A., Wong, T.W., Faber, D.S., and Zottoli, S.J. (2019) Invasion of microglia/macrophages and granulocytes into the Mauthner axon myelin sheath following spinal cord injury of the adult goldfish, Carassius auratus. Journal of Morphology 281:135-152. 

Kuehn, E., Stockinger, A.W., Girard, J., Raible, F., and Özpolat, B.D. (2019) A scalable culturing system for the marine annelid Platynereis dumerilii.  PLoS ONE 14(12): e0226156. 

Laubichler, M.D., Maienschein, J., and Renn, J. (2019) Computational history of knowledge: Challenges and opportunities. Isis 110:502-512. 

Lutz, H., Ramirez-Puebla, T., Abbo, L., Durand, A., Schlundt, C., Gottel, N., Sjaarda, A., Hanlon, R.T., Gilbert, J.A., and Mark Welch, J.L. (2019) A simple microbiome in the European common cuttlefish, Sepia officinalis. mSystems 4:e00177-19. 

MacCord, K. (2019) The impacts of assumptions on theories of tooth development and evolution at the turn of the nineteenth century. History and Philosophy of the Life Sciences 41:12. 

MacCord, K., and Maienschein, J. (2019) Understanding regeneration at different scales. Elife 8, e46569. 

Marian, J.E.A.R., Apostolico, L.H., Chiao, C.-C., Hanlon, R.T., Hirohashi, N., Iwata, Y., Mather, J., Sato, N. and Shaw, P. (2019) Male alternative reproductive tactics and associated evolution of anatomical characteristics in loliginid squid. Frontiers in Physiology 10:1281. 

Messerli, M.A., Raihan, M.J., Kobylkevich, B.M., Benson, A.C., Bruening, K.S., Shribak, M., Rosenthal, J.J.C., and Sohn, J.J. (2019) Construction and composition of the squid pen from Doryteuthis pealeii. Biological Bulletin 237(1):1-15. 

Montiel-Gonzalez, M.R., Diaz Quiroz, J.F., and Rosenthal, J.J.C. (2019) Current strategies for site-directed RNA editing using ADARs. Methods 156:16-24. 

Nagashima, R., Hibino, K., Ashwin, S.S., Babokhov, M., Fujishiro, S., Imai, R., Nozaki, T., Tamura, S., Tani, T., Kimura, H., Shribak, M., Kanemaki, M.T., Sasai, M., and Maeshima, K. (2019) Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II. Journal of Cell Biology 218(5):1511-1530. 

Nakamura, M., Yoshida, H., Takahashi, E., Wlizla, M., Takebayashi-Suzuki, K., Horb, M.E., and Suzuki, A. (2019) The AP-1 transcription factor JunB functions in Xenopus tail regeneration by positively regulating cell proliferation. Biochemical and Biophysical Research Communications, Dec 4, pii: S0006-291X(19)32180-1. . [Epub ahead of print]

Ritschard, E.A., Whitelaw, B., Albertin, C.B., Cooke, I.R., Strugnell, J.M., and Simakov, O. (2019) Coupled genomic evolutionary histories as signatures of organismal innovations in cephalopods. BioEssays 41(12).  

Sabin, K.Z., Jiang, P. Gearhart, M.D., Stewart, R., and Echeverri, K. (2019) AP-1cFos/JunB/miR-200a regulate the pro-regenerative glial cell response during axolotl spinal cord regeneration. Communications Biology 2(91). 

Sánchez-García, M.A., Zottoli, S.J., and Roberson, L.M. (2019) Hypoxia has a lasting effect on fast-startle behavior of the tropical fish Haemulon plumieri. Biological Bulletin 237(1):48-62. 

Schnell, A.K., Jozet-Alves, C., Hall, K.C., Radday, L., and Hanlon, R.T. (2019) Fighting and mating success in giant Australian cuttlefish is influenced by behavioural lateralization. Proceedings of the Royal Society B: Biological Sciences 286(1898):20182507. 

Williams, T.L., Senft, S.L., Yeo, J., Martín-Martínez, F.J., Kuzirian, A.M., Martin, C.A., DiBona, C.W., Chen, C.T., Dinneen, S.R., Nguyen, H.T., Gomes, C.M., Rosenthal, J.J.C., MacManes, M.D., Chu, F., Buehler, M.J., Hanlon, R.T., and Deravi, L.F. (2019) Dynamic pigmentary and structural coloration within cephalopod chromatophore organs. Nature Communications 10(1):1004.